Additionally, this new version increased 2,449 matrices extracted from ChIP-seq peaks for cis-regulatory element prediction. The 1,233,999 regulatory linkages were identified among target genes and 99 regulatory factors (TFs, histones, and other DNA-binding proteins) across seven species including A.

Since ChIP-seq became a powerful technique to explore the regulatory landscape in genome, genomic locations of TFBSs were captured from 662 public ChIP-seq samples by using uniformly data processing in this study. In this release, 17,230 TFs were collected from 78 plant species. The Plant Promoter Analysis Navigator (PlantPAN ) is an effective resource for predicting important regulatory elements (transcription factors binding sites (TFBSs), CpG islands, Tandem repeats, and conserved regions) and transcription factors (TFs) in a promoter or a set of promoters in plants. ★★★★★Ĭhi-Nga Chow, Tzong-Yi Lee, Yu-Cheng Hung, Guan-Zhen Li, Kuan-Chieh Tseng, Ya-Hsin Liu, Po-Li Kuo, Han-Qin Zheng, and Wen-Chi Chang 'PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants' Nucleic Acids Res. ★★★★★ PlantPAN 3.0 TF position weight matrix download is available. Notification: PlantPAN system will shut down on March 24th 15:00 - March 27th 10:00 2023 (GMT+8) due to scheduled maintenance. The current PlantPAN release (version 3.0) contains 17,230 TFs and 4,703 matrices of TF binding sites among 78 plant species.įor optimal use of this database, we recommend to use Google Chrome or Firefox browser and above at 1680 x 1050 resolution. The Plant Promoter Analysis Navigator (PlantPAN ) provides an informative resource for detecting transcription factor binding sites (TFBSs), corresponding TFs, and other important regulatory elements (CpG islands and tandem repeats) in a promoter or a set of promoters in plants.

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